Tag Archives: MyResearch

Corona-induced transition from molecular to particle motion in biological media

Light signatures generated by particles in a nanoscopeIn last month’s post [see ‘Nanoparticle motion through heterogeneous hydrogels’ on November 6th, 2024], I described our recent work on tracking nanoparticles through a model of the vitreous humour and mentioned it was the first of two articles published in the Nature journal, Scientific Reports.  In the second article, we explored the use of caustics in an optical microscope [see ‘Seeing the invisible’ on October 29th, 2014] to track nanoparticles in biofluids.  Nanoparticles are below the resolution of an optical microscope because they are substantially smaller than the wavelength of visible light; hence, they are usually tracked using fluorescent markers or tags attached chemically to the nanoparticles.  These tags can influence both the motion of the particles and biological activity so caustics provide a label-free technique that allows particles to be tracked in real-time using a standard optical microscope.  In most of our previous research, we have tracked nanoparticles in transparent fluids such as water, glycerol-water mixtures, or the hydrogels described in last month’s post.  In our latest work, we have tracked small nanoparticles with diameters from 10 to 100 nm in common cell culture media with different concentrations of serum proteins.  These fluids are a ‘soup’ of complex protein molecules that interact with one another and the gold nanoparticles being tracked.  We found that the presence of proteins caused a reduction in the rate of diffusion for both positively- and negatively-charged particles and we concluded that the proteins form a corona around each nanoparticle effectively enlarging its diameter.  For larger nanoparticles, and those positively-charged, the enlargement appears to cause a transition from molecular motion, in which particle diameter is unimportant, to particle motion where larger particles diffuse more slowly.  We first explored this transition from fractional to classical Stokes-Einstein behaviour in simple fluids in 2017 [‘Slow moving nanoparticles‘ on December 13th 2017] and it seems likely to be complicated in these complex fluids.  Hence, understanding protein dynamics as well nanoparticle dynamics will be essential to the development of nanotechnologies applicable in biological environments.  So, we have lots more work to do!

Sources:

Schleyer G, Patterson EA, Curran JM. Label free tracking to quantify nanoparticle diffusion through biological media. Scientific Reports. 2024 Aug 13;14(1):18822.

Coglitore D, Edwardson SP, Macko P, Patterson EA, Whelan MP, Transition from fractional to classical Stokes-Einstein behaviour in simple fluids, Royal Society Open Science, 4:170507, 2017.

Nanoparticle motion through heterogeneous hydrogels

Over the last couple of years, we have been transitioning a technique, which we developed for tracking the motion of nanoparticles using caustics [see ‘Slow moving nanoparticles‘ on December 13th 2017], from its initial use in exploring mechanics at the nanoscale to applications in nanobiology [See ‘Label-free real-time tracking of individual bacterium‘ on January 25th, 2023] where it has the advantages of functioning in real-time and being label-free (chemical labels can impact motion, protein interactions and cell behaviour).  In the summer, we had couple of articles published in consecutive issues of the Nature journal, Scientific Reports which describe our recent work.  In the first, we have explored the diffusion of nanoparticles through a synthetic analogue of the vitreous humour in order to support the design of novel therapeutics for retinal diseases.  Retinal diseases, such as macular degeneration and diabetic retinopathy, affects millions of people globally and treatment often involves frequent intravitreal injections of anti-vascular endothelium growth factor agents and corticoids.  Delivery of the appropriate dose to the retinal cell layer is challenging due to the complex nature of the vitreous and functionalised nanoparticles offer a potential solution.  In vivo animal testing is inappropriate because of the ethical concerns and poor representation of human eyes and ex vivo testing of cadaveric eyes is unreliable due to the instability of biomechanical and biochemical properties of the vitreous humour.  Hence, we used agar-hyaluronic acid hydrogels as an in vitro model of the vitreous and employed the caustic technique to track the motion of nanoparticles through the hydrogels.  The hydrogels had been validated as a representative model of the vitreous humour by other research groups.  Our tracking technique revealed that the electric charge on the nanoparticles did not affect their diffusion through the hydrogel; however, both the diameter of the particles and the heterogeneous nature of the gel influenced the diffusion.  Nanoparticles with diameters of 200, 100 and 50 nm moved progressively more quickly and over a larger area.  The diffusion rates in hydrogels with a high viscosity (about 450  Pa.s) were consistent throughout the gel implying that the gel was homogeneous, while gels with medium (about 40 Pa.s) to low (about 3 Pa.s) viscosity generated diffusion rates that were distributed bi-modally suggesting a heterogeneous gel with zones of low and high density in which the particles moved more or less freely.  The heterogeneity of a gel renders a global value for viscosity somewhat meaningless and makes comparisons difficult with the vitreous humour because it is also heterogeneous; however, global values of viscosity for porcine vitreous humour are typically 1 Pa.s.  We are continuing this research; however, our published work has demonstrated that the use of caustics in an optical microscope is a reproducible and inexpensive technique for exploring the design of novel nanoscale drug delivery systems for the eye.

Source: Lorenzo Lopez M, Kearns VR, Curran JM, Patterson EA. Diffusion of nanoparticles in heterogeneous hydrogels as vitreous humour in vitro substitutes. Scientific reports. 2024 Jul 29;14(1):1744.

Image: Random track of a nanoparticle superimposed on its image generated in the microscope using a pin-hole and narrowband filter.

Commoditisation of civil nuclear power

Logo for BBC Inside ScienceA colleague and I published a paper last month that we hope will bring about a paradigm shift in the nuclear power industry. I was interviewed on BBC Radio 4’s Inside Science on the day following its publication – its the first time one of my scientific papers has made that big a splash in the media!  You can listen to the programme on BBC Sounds at https://www.bbc.co.uk/sounds/play/m001zdwv.

In the paper we describe a blueprint for the factory-production of sealed micro-power units with a digitally-enabled, holistic assurance framework.  Currently, several designs of micro-reactors are progressing to the prototype stage with hazards contained on-site.  The integration of these approaches enables a transformation of the regulatory regime to type or series approval at the factory, similar to the aerospace industry, and supported by digital tools such as block chains to provide transparent quality assurance within the supply chain.  The transformation of the regulatory regime and the shift to ‘flow’ production in a factory would remove the financial risk from the power plant to the factory thereby enabling nuclear power to become a realistic competitor for intermittent green energy sources, such as wind and solar, both in terms of financial and ecological costs.  The output from three production lines could replace the current electricity generating capacity from fossil fuels in the UK over approximately 15 years thus making a significant contribution to achieving net zero greenhouse gas emissions.  We propose a design philosophy for the micro-power units that will allow them to go unnoticed in an urban environment or even become an iconic product that signals a community’s commitment to responsible stewardship of the Earth’s resources.  Our blueprint represents a revolutionary change for the nuclear power industry that would likely lead to the commoditisation of nuclear power whereas the status quo probably leads to extinction.

The paper is published with open access (its free) at Patterson EA & Taylor RJ, 2024, The commoditisation of civil nuclear power, Royal Society Open Science, 11:240021.

More on fairy lights and volume decomposition (with ice cream included)

Explanation in textLast June, I wrote about representing five-dimensional data using a three-dimensional stack of transparent cubes containing fairy lights whose brightness varied with time and also using feature vectors in which the data are compressed into a relatively short string of numbers [see ‘Fairy lights and decomposing multi-dimensional datasets’ on June 14th, 2023].  After many iterations, we have finally had an article published describing our method of orthogonally decomposing multi-dimensional data arrays using Chebyshev polynomials.  In this context, orthogonal means that components of the resultant feature vector are statistically independent of one another.  The decomposition process consists of fitting a particular form of polynomials, or equations, to the data by varying the coefficients in the polynomials.  The values of the coefficients become the components of the feature vector.  This is what we do when we fit a straight line of the form y=mx+c to set of values of x and y and the coefficients are m and c which can be used to compare data from different sources, instead of the datasets themselves.  For example, x and y might be the daily sales of ice cream and the daily average temperature with different datasets relating to different locations.  Of course, it is much harder for data that is non-linear and varying with w, x, y and z, such as the intensity of light in the stack of transparent cubes with fairy lights inside.  In our article, we did not use fairy lights or icecream sales, instead we compared the measurements and predictions in two case studies: the internal stresses in a simple composite specimen and the time-varying surface displacements of a vibrating panel.

The image shows the normalised out-of-plane displacements as the colour as a function of time in the z-direction for the surface of a panel represented by the xy-plane.

Source:

Amjad KH, Christian WJ, Dvurecenska KS, Mollenhauer D, Przybyla CP, Patterson EA. Quantitative Comparisons of Volumetric Datasets from Experiments and Computational Models. IEEE Access. 11: 123401-123417, 2023.